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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00134216001 | ||||||||
Common Name | GSBRNA2T00134216001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 407aa MW: 42883.2 Da PI: 8.6563 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.8 | 4.8e-38 | 90 | 149 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalr vPvGgg+r+nk+++ GSBRNA2T00134216001 90 ETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRSVPVGGGCRRNKRTK 149 6789*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-39 | 73 | 147 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.1E-32 | 92 | 147 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.394 | 93 | 147 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 95 | 131 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MVFSSFPTYP DSSNWQQQHQ PITSTVGFTG DNNISQQFLP HHPLPPQPQQ TPPPLHHNGG 60 GGGGPGGPGG SIRPGSMAER ARIANIPMPE TALKCPRCDS TNTKFCYFNN YSLTQPRHFC 120 KACRRYWTRG GALRSVPVGG GCRRNKRTKN SSGGGGGGSS CSGNSKSQDS NTSSDQYHDR 180 AMANNQMGPP PSSTSLSSLL SSYNAGLIPG HDHNNNNILG LGSSLPPLKL MPPLDFTDNF 240 TLQYGTVSAP SYHVGGGSGG GGGAEALLTG FDQWRFPAPH HQLPLLGGLD SSSSSSGLYQ 300 FDHQNQTGMD PGYGLVTSSG QYRPKNIFHN LVSSSVSSAM VTATASQLAS VKMEDSNNQL 360 NMSRQLFGTE QQLWNIHGSA ASAAAATTSS WSDVSINFSS SSTSNI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14538 | 1e-122 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00134216001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC241023 | 0.0 | AC241023.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039N20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625612.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.1-like | ||||
Swissprot | Q9LZ56 | 1e-160 | DOF51_ARATH; Dof zinc finger protein DOF5.1 | ||||
TrEMBL | A0A078CVP1 | 0.0 | A0A078CVP1_BRANA; BnaC03g00760D protein | ||||
STRING | Bra005725.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11519 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 1e-130 | Dof family protein |
Publications ? help Back to Top | |||
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